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API
Model
drvi.model.DRVI
drvi.model.DRVIModule
Tools
drvi.utils.tools.set_latent_dimension_stats
drvi.utils.tools.traverse_latent
drvi.utils.tools.calculate_differential_vars
drvi.utils.tools.get_split_effects
drvi.utils.tools.iterate_on_top_differential_vars
Plotting
drvi.utils.plotting.plot_latent_dimension_stats
drvi.utils.plotting.plot_latent_dims_in_umap
drvi.utils.plotting.plot_latent_dims_in_heatmap
drvi.utils.plotting.show_top_differential_vars
drvi.utils.plotting.plot_relevant_genes_on_umap
drvi.utils.plotting.show_differential_vars_scatter_plot
drvi.utils.plotting.differential_vars_heatmap
drvi.utils.plotting.make_balanced_subsample
drvi.utils.plotting.cmap
Metrics
drvi.utils.metrics.DiscreteDisentanglementBenchmark
drvi.utils.metrics.nn_alignment_score
drvi.utils.metrics.discrete_scaled_mutual_info_score
drvi.utils.metrics.spearman_correlation_score
drvi.utils.metrics.most_similar_averaging_score
drvi.utils.metrics.latent_matching_score
drvi.utils.metrics.most_similar_gap_score
General
Changelog
Contributing guide
References
Usage
Tutorials
General training and interpretability pipeline
Transfer learning to new dataset (query to reference mapping)
Finding rare (un-annotated) cell types with DRVI
Identifying cell types of DRVI factors
Identifying biological processes of DRVI factors
Identifying DRVI factors with LLM tools
Curating DRVI factor annotations
Porting a DRVI model (drvi-py < 0.3) to scvi.external.DRVI (scvi-tools)
Repository
Show source
.rst
.pdf
drvi.utils.plotting.cmap
drvi.utils.plotting.cmap
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