Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | X | Z A adata (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) adata_manager (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) add_embedding() (drvi.internal.drvi.DRVIModule method) add_module() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) add_state() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) additional_metric_params (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) aggregated_results (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) aggregation_methods (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) apply() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) B bfloat16() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) buffers() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) C calculate_interpretability_scores() (drvi.internal.DRVI method) (drvi.model.DRVI method) call_super_init (drvi.internal.drvi.DecoderDRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) children() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) clone() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) compile() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) compute() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) compute_embedding() (drvi.internal.drvi.DRVIModule method) convert_legacy_save() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) cpu() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) cuda() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) D data_registry() (drvi.internal.DRVI method) (drvi.model.DRVI method) DecoderDRVI (class in drvi.internal.drvi) deregister_manager() (drvi.internal.DRVI method) (drvi.model.DRVI method) device (drvi.internal.DRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) (drvi.model.DRVI attribute) differential_abundance() (drvi.internal.DRVI method) (drvi.model.DRVI method) differential_expression() (drvi.internal.DRVI method) (drvi.model.DRVI method) dim_titles (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) discrete_scaled_mutual_info_score() (in module drvi.utils.metrics) DiscreteDisentanglementBenchmark (class in drvi.utils.metrics) double() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) DRVI (class in drvi.internal) (class in drvi.model) drvi.utils.plotting.cmap module DRVIModule (class in drvi.internal.drvi) dtype (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) dump_patches (drvi.internal.drvi.DecoderDRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) E embed (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) embeddings_dict (drvi.internal.drvi.DRVIModule attribute) enable_residual() (in module drvi.internal.drvi) eval() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) evaluate() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) extra_repr() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) F float() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) forward() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) full_state_update (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) G generate_sparse_latent_representation() (drvi.internal.DRVI method) generative() (drvi.internal.drvi.DRVIModule method) get_aggregated_posterior() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_anndata_manager() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_batch_representation() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_buffer() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) get_effect_of_splits_out_of_distribution() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_effect_of_splits_within_distribution() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_elbo() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_embedding() (drvi.internal.drvi.DRVIModule method) get_extra_state() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) get_feature_correlation_matrix() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_from_registry() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_importance_weights() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_interpretability_scores() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_latent_library_size() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_latent_representation() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_latest_min_max() (drvi.internal.drvi.LatentStats method) get_likelihood_parameters() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_marginal_ll() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_normalized_expression() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_normalized_function_name (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) get_parameter() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) get_reconstruction_effect_of_each_split() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_reconstruction_error() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_results() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) get_results_details() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) get_setup_arg() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_sparse_latent_representation() (drvi.internal.DRVI method) get_state_registry() (drvi.internal.DRVI method) (drvi.model.DRVI method) get_submodule() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) get_var_names() (drvi.internal.DRVI method) (drvi.model.DRVI method) H half() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) higher_is_better (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) history (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) I inference() (drvi.internal.drvi.DRVIModule method) init_embedding() (drvi.internal.drvi.DRVIModule method) ipu() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) is_complete() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) is_differentiable (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) is_trained (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) iterate_on_ae_output() (drvi.internal.DRVI method) (drvi.model.DRVI method) iterate_on_decoded_latent_samples() (drvi.internal.DRVI method) (drvi.model.DRVI method) iterate_on_effect_of_splits_within_distribution() (drvi.internal.DRVI method) (drvi.model.DRVI method) L latent_matching_score() (in module drvi.utils.metrics) LatentStats (class in drvi.internal.drvi) load() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_query_data() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) load_registry() (drvi.internal.DRVI static method) (drvi.model.DRVI static method) load_results() (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_results_details() (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_state_dict() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) loss() (drvi.internal.drvi.DRVIModule method) M make_balanced_subsample() (in module drvi.utils.plotting) marginal_ll() (drvi.internal.drvi.DRVIModule method) merge_state() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) metric_state (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) metrics (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) minified_data_type (drvi.internal.DRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.model.DRVI attribute) minify_adata() (drvi.internal.DRVI method) (drvi.model.DRVI method) module drvi.utils.plotting.cmap modules() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) most_similar_averaging_score() (in module drvi.utils.metrics) most_similar_gap_score() (in module drvi.utils.metrics) mtia() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) N named_buffers() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) named_children() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) named_modules() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) named_parameters() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) nn_alignment_score() (in module drvi.utils.metrics) O on_load() (drvi.internal.drvi.DRVIModule method) one_hot_target (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) P parameters() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) persistent() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) plot() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) plot_interpretability_scores() (in module drvi.utils.plotting) plot_latent_dimension_stats() (in module drvi.utils.plotting) plot_latent_dims_in_heatmap() (in module drvi.utils.plotting) plot_latent_dims_in_umap() (in module drvi.utils.plotting) plot_legend_name (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) plot_lower_bound (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) plot_upper_bound (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) posterior_predictive_sample() (drvi.internal.DRVI method) (drvi.model.DRVI method) prepare_query_anndata() (drvi.internal.DRVI static method) (drvi.model.DRVI static method) prepare_query_mudata() (drvi.internal.DRVI static method) (drvi.model.DRVI static method) R register_backward_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_buffer() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_forward_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_forward_pre_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_full_backward_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_full_backward_pre_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_load_state_dict_post_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_load_state_dict_pre_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_manager() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) register_module() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_parameter() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_state_dict_post_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) register_state_dict_pre_hook() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) registry (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) remove_embedding() (drvi.internal.drvi.DRVIModule method) requires_grad_() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) reset() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) results (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) run_id (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) run_name (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) S sample() (drvi.internal.drvi.DRVIModule method) save() (drvi.internal.DRVI method) (drvi.model.DRVI method) (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) set_dtype() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) set_extra_state() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) set_latent_dimension_stats() (drvi.internal.DRVI method) (drvi.model.DRVI method) set_submodule() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) setup_annbatch() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) setup_anndata() (drvi.internal.DRVI class method) (drvi.model.DRVI class method) share_memory() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) spearman_correlation_score() (in module drvi.utils.metrics) state_dict() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) StreamingPairwiseMI (class in drvi.internal.drvi) summary_string (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) sync() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) sync_context() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) T T_destination (drvi.internal.drvi.DecoderDRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) test_indices (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) to() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) to_device() (drvi.internal.DRVI method) (drvi.model.DRVI method) to_empty() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) train() (drvi.internal.DRVI method) (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) (drvi.model.DRVI method) train_indices (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) training (drvi.internal.drvi.DecoderDRVI attribute) (drvi.internal.drvi.DRVIModule attribute) (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) transfer_fields() (drvi.internal.DRVI method) (drvi.model.DRVI method) type() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) U unsync() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) update() (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) update_called (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) update_count (drvi.internal.drvi.LatentStats attribute) (drvi.internal.drvi.StreamingPairwiseMI attribute) update_setup_method_args() (drvi.internal.DRVI method) (drvi.model.DRVI method) V validation_indices (drvi.internal.DRVI attribute) (drvi.model.DRVI attribute) version (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) view_anndata_setup() (drvi.internal.DRVI method) (drvi.model.DRVI method) view_registry() (drvi.internal.DRVI method) (drvi.model.DRVI method) view_setup_args() (drvi.internal.DRVI static method) (drvi.model.DRVI static method) view_setup_method_args() (drvi.internal.DRVI method) (drvi.model.DRVI method) X xpu() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method) Z zero_grad() (drvi.internal.drvi.DecoderDRVI method) (drvi.internal.drvi.DRVIModule method) (drvi.internal.drvi.LatentStats method) (drvi.internal.drvi.StreamingPairwiseMI method)