Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | X | Z A adata (drvi.model.DRVI attribute) adata_manager (drvi.model.DRVI attribute) add_module() (drvi.model.DRVIModule method) additional_metric_params (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) aggregated_results (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) aggregation_methods (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) apply() (drvi.model.DRVIModule method) B bfloat16() (drvi.model.DRVIModule method) buffers() (drvi.model.DRVIModule method) C calculate_differential_vars() (in module drvi.utils.tools) calculate_interpretability_scores() (drvi.model.DRVI method) call_super_init (drvi.model.DRVIModule attribute) children() (drvi.model.DRVIModule method) compile() (drvi.model.DRVIModule method) convert_legacy_save() (drvi.model.DRVI class method) cpu() (drvi.model.DRVIModule method) cuda() (drvi.model.DRVIModule method) D data_registry() (drvi.model.DRVI method) decode_latent_samples() (drvi.model.DRVI method) deregister_manager() (drvi.model.DRVI method) device (drvi.model.DRVI attribute) (drvi.model.DRVIModule attribute) differential_abundance() (drvi.model.DRVI method) differential_expression() (drvi.model.DRVI method) differential_vars_heatmap() (in module drvi.utils.plotting) dim_titles (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) DiscreteDisentanglementBenchmark (class in drvi.utils.metrics) double() (drvi.model.DRVIModule method) DRVI (class in drvi.model) drvi.model module drvi.utils.plotting.cmap module DRVIModule (class in drvi.model) dump_patches (drvi.model.DRVIModule attribute) E embed (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) eval() (drvi.model.DRVIModule method) evaluate() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) extra_repr() (drvi.model.DRVIModule method) F float() (drvi.model.DRVIModule method) forward() (drvi.model.DRVIModule method) fully_deterministic (drvi.model.DRVIModule attribute) G generate_sparse_latent_representation() (drvi.model.DRVI method) generative() (drvi.model.DRVIModule method) get_aggregated_posterior() (drvi.model.DRVI method) get_anndata_manager() (drvi.model.DRVI method) get_buffer() (drvi.model.DRVIModule method) get_effect_of_splits_out_of_distribution() (drvi.model.DRVI method) get_effect_of_splits_within_distribution() (drvi.model.DRVI method) get_elbo() (drvi.model.DRVI method) get_extra_state() (drvi.model.DRVIModule method) get_feature_correlation_matrix() (drvi.model.DRVI method) get_from_registry() (drvi.model.DRVI method) get_importance_weights() (drvi.model.DRVI method) get_interpretability_scores() (drvi.model.DRVI method) get_latent_library_size() (drvi.model.DRVI method) get_latent_representation() (drvi.model.DRVI method) get_likelihood_parameters() (drvi.model.DRVI method) get_marginal_ll() (drvi.model.DRVI method) get_normalized_expression() (drvi.model.DRVI method) get_normalized_function_name (drvi.model.DRVI attribute) get_parameter() (drvi.model.DRVIModule method) get_reconstruction_effect_of_each_split() (drvi.model.DRVI method) get_reconstruction_error() (drvi.model.DRVI method) get_results() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) get_results_details() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) get_setup_arg() (drvi.model.DRVI method) get_sparse_latent_representation() (drvi.model.DRVI method) get_split_effects() (in module drvi.utils.tools) get_state_registry() (drvi.model.DRVI method) get_submodule() (drvi.model.DRVIModule method) get_var_names() (drvi.model.DRVI method) H half() (drvi.model.DRVIModule method) history (drvi.model.DRVI attribute) I inference() (drvi.model.DRVIModule method) ipu() (drvi.model.DRVIModule method) is_complete() (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) is_trained (drvi.model.DRVI attribute) iterate_on_ae_output() (drvi.model.DRVI method) iterate_on_decoded_latent_samples() (drvi.model.DRVI method) iterate_on_effect_of_splits_within_distribution() (drvi.model.DRVI method) iterate_on_encoded_input() (drvi.model.DRVI method) iterate_on_top_differential_vars() (in module drvi.utils.tools) L latent_matching_score() (in module drvi.utils.metrics) load() (drvi.model.DRVI class method) (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_query_data() (drvi.model.DRVI class method) load_registry() (drvi.model.DRVI static method) load_results() (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_results_details() (drvi.utils.metrics.DiscreteDisentanglementBenchmark class method) load_state_dict() (drvi.model.DRVIModule method) local_mutual_info_score() (in module drvi.utils.metrics) loss() (drvi.model.DRVIModule method) M make_balanced_subsample() (in module drvi.utils.plotting) marginal_ll() (drvi.model.DRVIModule method) metrics (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) module drvi.model drvi.utils.plotting.cmap modules() (drvi.model.DRVIModule method) most_similar_averaging_score() (in module drvi.utils.metrics) most_similar_gap_score() (in module drvi.utils.metrics) mtia() (drvi.model.DRVIModule method) N named_buffers() (drvi.model.DRVIModule method) named_children() (drvi.model.DRVIModule method) named_modules() (drvi.model.DRVIModule method) named_parameters() (drvi.model.DRVIModule method) nn_alignment_score() (in module drvi.utils.metrics) O on_load() (drvi.model.DRVIModule method) one_hot_target (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) P parameters() (drvi.model.DRVIModule method) plot_interpretability_scores() (drvi.model.DRVI method) plot_latent_dimension_stats() (in module drvi.utils.plotting) plot_latent_dims_in_heatmap() (in module drvi.utils.plotting) plot_latent_dims_in_umap() (in module drvi.utils.plotting) plot_relevant_genes_on_umap() (in module drvi.utils.plotting) posterior_predictive_sample() (drvi.model.DRVI method) prepare_query_anndata() (drvi.model.DRVI static method) prepare_query_mudata() (drvi.model.DRVI static method) R register_backward_hook() (drvi.model.DRVIModule method) register_buffer() (drvi.model.DRVIModule method) register_forward_hook() (drvi.model.DRVIModule method) register_forward_pre_hook() (drvi.model.DRVIModule method) register_full_backward_hook() (drvi.model.DRVIModule method) register_full_backward_pre_hook() (drvi.model.DRVIModule method) register_load_state_dict_post_hook() (drvi.model.DRVIModule method) register_load_state_dict_pre_hook() (drvi.model.DRVIModule method) register_manager() (drvi.model.DRVI class method) register_module() (drvi.model.DRVIModule method) register_parameter() (drvi.model.DRVIModule method) register_state_dict_post_hook() (drvi.model.DRVIModule method) register_state_dict_pre_hook() (drvi.model.DRVIModule method) registry (drvi.model.DRVI attribute) requires_grad_() (drvi.model.DRVIModule method) results (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) run_id (drvi.model.DRVI attribute) run_name (drvi.model.DRVI attribute) S sample() (drvi.model.DRVIModule method) save() (drvi.model.DRVI method) (drvi.utils.metrics.DiscreteDisentanglementBenchmark method) set_extra_state() (drvi.model.DRVIModule method) set_latent_dimension_stats() (drvi.model.DRVI method) (in module drvi.utils.tools) set_submodule() (drvi.model.DRVIModule method) setup_anndata() (drvi.model.DRVI class method) share_memory() (drvi.model.DRVIModule method) show_differential_vars_scatter_plot() (in module drvi.utils.plotting) show_top_differential_vars() (in module drvi.utils.plotting) spearman_correlataion_score() (in module drvi.utils.metrics) state_dict() (drvi.model.DRVIModule method) summary_string (drvi.model.DRVI attribute) T T_destination (drvi.model.DRVIModule attribute) test_indices (drvi.model.DRVI attribute) to() (drvi.model.DRVIModule method) to_device() (drvi.model.DRVI method) to_empty() (drvi.model.DRVIModule method) train() (drvi.model.DRVI method) (drvi.model.DRVIModule method) train_indices (drvi.model.DRVI attribute) training (drvi.model.DRVIModule attribute) transfer_fields() (drvi.model.DRVI method) traverse_latent() (in module drvi.utils.tools) type() (drvi.model.DRVIModule method) U update_setup_method_args() (drvi.model.DRVI method) V validation_indices (drvi.model.DRVI attribute) version (drvi.utils.metrics.DiscreteDisentanglementBenchmark attribute) view_anndata_setup() (drvi.model.DRVI method) view_registry() (drvi.model.DRVI method) view_setup_args() (drvi.model.DRVI static method) view_setup_method_args() (drvi.model.DRVI method) X xpu() (drvi.model.DRVIModule method) Z zero_grad() (drvi.model.DRVIModule method)